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Which polymerase does NOT require a template?


A) RNA Pol I
B) RNA Pol II
C) reverse transcriptase
D) polyadenylate polymerase
E) RNA replicase

F) A) and B)
G) A) and C)

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In the synthesis of the 5' cap of mRNA, what enzyme classes are used at each step?

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The synthesis of the 5' cap structure of...

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Below, an RNA molecule is being transcribed from a strand of DNA. Indicate the 5' and 3' ends of the RNA molecule and of the strand of DNA that is complementary to the RNA molecule. In which direction is synthesis occurring? Below, an RNA molecule is being transcribed from a strand of DNA. Indicate the 5' and 3' ends of the RNA molecule and of the strand of DNA that is complementary to the RNA molecule. In which direction is synthesis occurring?

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AZT is one drug used as an HIV inhibitor. How does it specifically inhibit viral replication?


A) AZT is not taken up by human cells.
B) AZT binds to human polymerases with lower affinity than to viral reverse transcriptase.
C) AZT cannot be phosphorylated to a triphosphate.
D) AZT only inhibits active transcription and not DNA replication.
E) AZT inhibits viral assembly and packing.

F) C) and E)
G) B) and E)

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What statement is NOT true regarding retroviral reverse transcriptase and eukaryotic DNA polymerase δ\delta ?


A) Both enzymes require nucleic acid templates.
B) Both enzymes include proof-reading functions.
C) Both enzymes use dNTPs as substrates for synthesis.
D) Both enzymes require metal cofactors.
E) All of the statements are true.

F) A) and D)
G) B) and E)

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Which statement is FALSE regarding transcription at RNA polymerase II promoters?


A) Transcription requires binding of TBP to the -10 promoter element.
B) TFIIB binds TBP and recruits TFIIF that directs RNA polymerase II to the promoter.
C) TFIIH unwinds the DNA and phosphorylates the CTD of RNA polymerase II.
D) TFIIH subunits contribute to a nucleotide-excision repair process.
E) During the elongation phase, elongation factors suppress RNA polymerase II pausing and coordinate protein-protein interactions.

F) A) and C)
G) A) and B)

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In eukaryotic splicing, U1-snRNP:


A) is made entirely of RNA.
B) is a component of the active splicesosome.
C) is complementary to the 5' splice site for the intron.
D) becomes covalently attached to a lariat intermediate.
E) dissociates from the spliceosomal complex after lariat formation.

F) A) and E)
G) B) and D)

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Which compound is NOT part of miRNA formation?


A) pri-miRNA
B) pre-miRNA
C) Dicer
D) RISC
E) pseudouridine

F) A) and B)
G) C) and E)

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The sigma factor of E. coli RNA polymerase:


A) associates with the promoter before binding core enzyme.
B) combines with the core enzyme to confer specific binding to a promoter.
C) is inseparable from the core enzyme.
D) is required for termination of an RNA chain.
E) will catalyze synthesis of RNA from both DNA template strands in the absence of the core enzyme.

F) A) and E)
G) A) and D)

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Processing of a primary mRNA transcript in a eukaryotic cell does NOT normally involve:


A) attachment of a long poly(A) sequence at the 3' end.
B) conversion of normal bases to modified bases, such as inosine and pseudouridine.
C) excision of intervening sequences (introns) .
D) joining of exons.
E) methylation of one or more guanine nucleotides at the 5' end.

F) A) and B)
G) All of the above

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RNA polymerase:


A) binds tightly to a region of DNA thousands of base pairs away from the DNA to be transcribed.
B) can synthesize RNA chains without a primer.
C) has a subunit called λ\lambda
(lambda) , which acts as a proofreading ribonuclease.
D) separates DNA strands throughout a long region of DNA (up to thousands of base pairs) , then copies one of them.
E) synthesizes RNA chains in the 3' \rightarrow 5' direction.

F) A) and D)
G) A) and C)

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What is a telomere? Describe the key features of its structure. What is unusual about the structure and/or mechanism of action of telomerase?

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A telomere is a region of repetitive nuc...

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Which statement is FALSE with respect to different σ\sigma (sigma) subunits in bacterial RNA polymerase?


A) Specific amino acids in σ\sigma subunits will interact with the polymerase.
B) σ\sigma subunits will specifically interact with DNA sequences spanning approximately three turns of the helix.
C) σ\sigma subunits interact with both DNA and the RNA polymerase in the elongation form.
D) Multiple σ\sigma subunits exist in E. coli.
E) The binding of NusA is competitive with the binding of σ\sigma subunits in E. coli.

F) A) and D)
G) C) and D)

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Which eukaryotic transcription factor has helicase activity?


A) TFIIA
B) TFIIB
C) TFIIF
D) TFIIH
E) TBP

F) B) and D)
G) A) and B)

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Retroviral genomes tend to mutate at a very high rate. What statement BEST explains this observation?


A) The RNA genome is highly susceptible to chemical damage.
B) Specific enzymes in cells will modify the genome as a protection against infection.
C) RNA phosphodiester bonds will tend to hydrolyze spontaneously.
D) The virus changes the sequence to prevent antibody binding to the viral genome.
E) Reverse transcriptase lacks a 3' to 5'exonuclease activity.

F) A) and C)
G) B) and D)

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Which compound is NOT a posttranscriptional modification in mRNA or tRNA?


A) 4-thiouridine
B) pseudouridine
C) dihydrouridine
D) ribouridine
E) ribothymidine

F) B) and E)
G) All of the above

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Which process is involved in generating the different forms of the apoB gene product in liver and intestines?


A) alternative 5' splice-site choice
B) alternative 3' splice-site choice
C) a C \rightarrow U deamination
D) All of these processes are involved.
E) None of these processes is involved.

F) B) and C)
G) B) and E)

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Compare and contrast ρ\rho -dependent and ρ\rho -independent termination of transcription in prokaryotes.

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In prokaryotes, transcription terminatio...

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Write the sequence of the messenger RNA molecule synthesized from a DNA template strand having the sequence: (5')ATCGTACCGTTA(3')

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To write the sequence of the messenger R...

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Describe in words (not using structures) the important features of the structures present on the 5' and 3' ends of mature (processed) eukaryotic mRNAs.

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The 5' end of mature eukaryotic mRNAs co...

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