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Which statement about the reverse transcriptases of retroviruses and the RNA replicases of other single-stranded RNA viruses, such as R17 and influenza virus, is CORRECT?


A) Both enzymes can synthesize either RNA or DNA from an RNA template strand.
B) Both enzymes can utilize DNA in addition to RNA as a template strand.
C) Both enzymes carry the specificity for the RNA of their own virus.
D) Both enzymes have error rates similar to those of cellular RNA polymerases.
E) Both enzymes require host-encoded subunits for their replication function.

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Which statement about the synthesis of rRNA and tRNA in E. coli is TRUE?


A) Both rRNA and some tRNAs are part of the same primary transcript.
B) Each rRNA sequence (16S, 23S, 5S) is transcribed as a separate primary transcript.
C) Primary tRNA transcripts undergo methylation, but rRNA sequences are not methylated.
D) The tRNA sequences all lie at the 3'end of the rRNA transcripts.
E) There is a single copy of the rRNA genes.

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The excision (splicing) of many group I introns requires, in addition to the primary transcript RNA:


A) a cytosine nucleoside or nucleotide and a protein enzyme.
B) a guanine nucleoside or nucleotide (only) .
C) a protein enzyme only.
D) a small nuclear RNA and a protein enzyme.
E) ATP, NAD, and a protein enzyme.

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In order for RNA polymerase II to create a transcript, what is NOT necessary?


A) magnesium
B) dNTPs
C) topoisomerases
D) zinc
E) All of these are necessary.

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What is the utility of the SELEX protocol and how does it work?

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The SELEX (Systematic Evolution of Ligan...

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Which process is associated with the carboxy-terminal domain (CTD) of RNA polymerase II in eukaryotes?


A) formation of spliceosomes
B) attachment of the 5' cap to mRNA
C) polyadenylation of the 3' end of mRNA
D) phosphorylation and dephosphorylation
E) All of the answers are correct.

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List two main functions of the 5' cap structure. 99.4 distinct complexes bind to the carboxyl-terminal domain (CTD) of RNA polymerase II. List these complexes and state the consequences of the interaction with CTD.

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The 5'cap structure has two main functio...

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Transfer RNAs have several bases in addition to the normal four found in RNA. How are these rare bases incorporated into the tRNA molecule?

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Transfer RNAs (tRNAs) are crucial molecu...

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Which statement about E. coli RNA polymerase (core enzyme) is FALSE?


A) In the absence of the σ\sigma subunit, core polymerase has little specificity for where initiation begins.
B) The core enzyme contains several different subunits.
C) The core enzyme has no polymerizing activity until the σ\sigma subunit is bound.
D) The RNA chain grows in a 5' \rightarrow 3' direction.
E) The RNA product is complementary to the DNA template.

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Which statement is NOT true about telomerase?


A) Telomerase is a reverse transcriptase.
B) Telomerase utilizes a tRNA template.
C) The primer for telomerase is the 3'-end of the DNA chromosomes.
D) Telomerase synthesizes DNA in the 5' \rightarrow 3' direction.
E) Telomerase consists of both RNA and protein.

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Which statement does NOT indicate how retrotransposons and retroviruses are similar to each other?


A) Both contain long terminal repeated sequences.
B) Both are able to produce RNA products from their DNA.
C) Both contain reverse transcriptase coding regions.
D) Both contain envelope protein coding sequences.
E) Both integrate into a host genome.

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The reverse transcriptase of an animal RNA virus catalyzes:


A) degradation of the RNA strand in a DNA-RNA hybrid.
B) insertion of the viral genome into a chromosome of the host (animal) cell.
C) RNA formation in the 3' \rightarrow 5' direction.
D) RNA synthesis, but not DNA synthesis.
E) synthesis of an antisense RNA transcript.

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Name four general types of posttranscriptional processing reactions that are observed in RNA. Briefly (one sentence or less) point out an example of each type. In your example, identify the type of RNA molecule involved (tRNA, mRNA, rRNA, etc.), the type of "processing" involved, and whether the example is characteristic of eukaryotes or prokaryotes, or both. Do not describe specific genes, sequences, complicated structures, or enzymes.

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1. Splicing: Removal of introns from pre...

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Which property does NOT apply to RNA polymerase from E. coli (core enzyme alone) ?


A) It can extend an RNA chain and initiate a new chain.
B) It is required for the synthesis of mRNA, rRNA, and tRNA in E. coli.
C) It produces an RNA polymer that begins with a 5'-triphosphate.
D) It recognizes specific start signals in DNA.
E) It requires all four ribonucleoside triphosphates and a DNA template.

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The 5'-terminal cap structure of eukaryotic mRNAs is a(n) :


A) 7-methylcytosine joined to the mRNA via a 2',3'-cyclic linkage.
B) 7-methylguanosine joined to the mRNA via a 5' \rightarrow 3' diphosphate linkage.
C) 7-methylguanosine joined to the mRNA via a 5' \rightarrow 5' triphosphate linkage.
D) N6-methyladenosine joined to the mRNA via a 5' \rightarrow 5' phosphodiester bond.
E) O6-methylguanosine joined to the mRNA via a 5' \rightarrow 5' triphosphate linkage.

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What statement is TRUE regarding synthesis of nucleic acids by E. coli RNA polymerase?


A) The RNA/DNA hybrid assumes a B-form DNA conformation.
B) The RNA/DNA hybrid is antiparallel.
C) The RNA/DNA hybrid is between 10 and 20 base pairs long.
D) Unwinding the DNA duplex creates negative supercoils in the template DNA.
E) None of the statements is true.

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Which factor is NOT involved in mRNA processing in vertebrates?


A) 30S pre-rRNA
B) the nucleoleus
C) ribonucleases
D) snoRNAs
E) snoRNPs

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Which statement does NOT accurately describe a difference between RNA synthesis by polynucleotide phosphorylase and RNAP?


A) RNAP is a bacterial enzyme, while polynucleotide phosphorylase is not.
B) RNAP requires a template, while polynucleotide phosphorylase does not.
C) RNAP produces a specific product, while polynucleotide phosphorylase does not.
D) RNAP uses nucleotide triphosphates as substrates, while polynucleotide phosphorylase uses nucleotide diphosphates.
E) RNAP synthesizes RNA, while polynucleotide phosphorylase can synthesize or degrade RNA.

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Which item(s) can be described as a ribozyme(s) ?


A) group I introns
B) RNase P
C) group II introns
D) both group I and group II introns but not RNase P
E) Group I introns, group II introns, and RNase P can all be described as ribozymes.

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Which statement is FALSE regarding telomerase?


A) This enzyme requires a DNA component as a cofactor.
B) This enzyme is a DNA polymerase.
C) This enzyme extends the 3' end of a linear nucleic acid structure.
D) This enzyme uses dGTP and dTTP as substrates.
E) This enzyme synthesizes nucleic acids in a 5'to 3'direction.

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